Code Resources

Data portals

• NeuroXiv.org
• HortaCloud.janelia.org
• Brain Architecture Portal
• Brain Image Library
• NeuroMorpho.Org

Atlases and Knowledge Bases

• epDevAtlas
• Hippocampome.org
• DevCCF

Registration, Tracing, and Analysis Utilities

• Algorithms for registering your data with our mouse reference atlas
  • Generative Diffeomorphic Mapping
• Neural morphology software
  • nTracer2
  • xyz2swc
  • Axonal projection clustering
  • Projectomic quantification from multi-label retrograde tracing